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| Registros recuperados: 57 | |
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| Bomfim,ZV; Lima,KM; Silva,JG; Costa,MA; Zucchi,RA. |
| This study investigated the level of morphometric and genetic variability among populations of Anastrepha pickeli Lima from several localities in Brazil, one locality in Bolivia and one in Paraguay. Traditional and geometric morphometric analyses were used, as well as sequencing of a fragment of the cytochrome oxidase gene (COI). Six variables were measured from the aculeus for traditional morphometric analysis and 14 landmarks from the right wing were used for geometric analysis, using 10 specimes/population. The aculeus tip length, aculeus width at the end of the cloaca opening, and the serrate part length contributed with 62.7% for grouping. According to the results from traditional morphometry, there was no significant difference, but the multivariate... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Fruit fly; Geometric and traditional morphometry; Molecular phylogeny; Cytochrome oxidase I (COI); Taxonomy. |
| Ano: 2011 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1519-566X2011000500010 |
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| Skrede, I.; Carlsen, T.; Schumacher, T.. |
| Helvella is a widespread, speciose genus of large apothecial ascomycetes (Pezizomycete: Pezizales) that are found in terrestrial biomes of the Northern and Southern Hemispheres. This study represents a beginning on assessing species limits and applying correct names for Helvella species based on type material and specimens in the university herbaria (fungaria) of Copenhagen (C), Harvard (FH) and Oslo (O). We use morphology and phylogenetic evidence from four loci – heat shock protein 90 (hsp), translation elongation factor alpha (tef), RNA polymerase II (rpb2) and the nuclear large subunit ribosomal DNA (LSU) – to assess species boundaries in an expanded sample of Helvella specimens from Europe. We combine the morphological and phylogenetic information... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Molecular phylogeny; Pezizales; Systematics. |
| Ano: 2017 |
URL: http://www.repository.naturalis.nl/record/636691 |
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| Saburova, Maria; Chomerat, Nicolas. |
| A new photosynthetic, sand-dwelling marine dinoflagellate, Ailadinium reticulatum gen. et sp. nov., is described from the Jordanian coast in the Gulf of Aqaba, northern Red Sea, based on detailed morphological and molecular data. A. reticulatum is a large (53–61 μm long and 38–48 μm wide), dorsoventrally compressed species, with the epitheca smaller than the hypotheca. The theca of this new species is thick and peculiarly ornamented with round to polygonal depressions forming a foveate-reticulate thecal surface structure. The Kofoidian thecal tabulation is APC (Po, cp), 4′, 2a, 6′′, 6c, 4s, 6′′′, 1p, 1′′′′ or alternatively it can be interpreted as APC, 4′, 2a, 6′′, 6c, 4s, 6′′′, 2′′′′. The plate pattern of A. reticulatum is noticeably different from... |
| Tipo: Text |
Palavras-chave: Benthic dinoflagellates; Dinophyceae; Gulf of Aqaba; Jordan; LSU rDNA; Molecular phylogeny; Morphology; Red Sea; SSU rDNA; Taxonomy. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00226/33678/38183.pdf |
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| Saburova, Maria; Chomerat, Nicolas. |
| A small Prorocentrum species was found during a pilot taxonomic survey of marine benthic dinoflagellates in the northwestern Arabian Sea, Oman. Based on the study of cells from natural samples and laboratory cultures using light and scanning electron microscopy, this taxon is attributed to the little-known Prorocentrum sipadanense, recorded so far only from East Malaysia. The description of this species has been emended to include details of internal cell structure, composition of its periflagellar area and intraspecific variability in size, shape and pore pattern. Round to oval or ovoid cells of P. sipadanese are surrounded by a prominent marginal ridge and are 17.9–23.9 µm long and 15.0–19.8 µm wide, with a foveate to reticulate thecal plate surface and... |
| Tipo: Text |
Palavras-chave: Arabian Sea; Benthic dinoflagellates; Molecular phylogeny; Morphology; Oman; Prorocentrum sipadanense; Taxonomy. |
| Ano: 2016 |
URL: http://archimer.ifremer.fr/doc/00319/42990/42560.pdf |
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| Luo, Zhaohe; Lim, Zhen Fei; Mertens, Kenneth; Krock, Bernd; Teng, Sing Tung; Tan, Toh Hii; Leaw, Chui Pin; Lim, Po Teen; Gu, Haifeng. |
| The gonyaulacean family Protoceratiaceae is characterised by five precingular plates. It currently encompasses the type genus Ceratocorys and the fossil genus Atopodinium. Fourteen strains of Ceratocorys, Pentaplacodinium, and Protoceratium were established from Malaysian and Hawaiian waters, and their morphologies were examined using light and scanning electron microscopy. Two new species, Ceratocorys malayensis sp. nov. and Pentaplacodinium usupianum sp. nov., were described from Malaysian waters. They share a Kofoidean plate formula of Po, Pt, 3ʹ, 1a, 6ʹʹ, 6C, 6S, 5ʹʹʹ, 1p, 1ʹʹʹʹ. Ceratocorys malayensis has a short first apical plate (1ʹ) with no direct contact with the anterior sulcal plate (Sa) whereas Pentaplacodinium usupianum had a... |
| Tipo: Text |
Palavras-chave: Ceratocoryaceae; Gonyaulacaceae; Molecular phylogeny; Protoceratium reticulatum; Yessotoxin. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00589/70143/68109.pdf |
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| Lopez Flores, L; Suarez Santiago, V; Longet, D; Saulnier, Denis; Chollet, Bruno; Arzul, Isabelle. |
| Bonamia ostreae is a protozoan parasite that infects the European flat oyster Ostrea edulis, causing systemic infections and resulting in massive mortalities in populations of this valuable bivalve species. In this work, we have characterized B. ostreae actin genes and used their sequences for a phylogenetic analysis. Design of different primer sets was necessary to amplify the central coding region of actin genes of B. ostreae. Characterization of the sequences and their amplification in different samples demonstrated the presence of 2 intragenomic actin genes in B. ostreae, without any intron. The phylogenetic analysis placed B. ostreae in a clade with Minchinia tapetis, Minchinia teredinis and Haplosporidium costale as its closest relatives, and... |
| Tipo: Text |
Palavras-chave: Molecular phylogeny; Actin gene; Ostrea edulis parasite; Bonamia ostreae. |
| Ano: 2007 |
URL: http://archimer.ifremer.fr/doc/2007/publication-3562.pdf |
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| Segatto,Ana Lúcia Anversa; Thompson,Claudia Elizabeth; Freitas,Loreta Brandão. |
| Abstract Developmental genes are believed to contribute to major changes during plant evolution, from infrageneric to higher levels. Due to their putative high sequence conservation, developmental genes are rarely used as molecular markers, and few studies including these sequences at low taxonomic levels exist. WUSCHEL-related homeobox genes (WOX) are transcription factors exclusively present in plants and are involved in developmental processes. In this study, we characterized the infrageneric genetic variation of Petunia WOX genes. We obtained phylogenetic relationships consistent with other phylogenies based on nuclear markers, but with higher statistical support, resolution in terminals, and compatibility with flower morphological changes. |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Molecular phylogeny; Recently diverged species; Developmental genes. |
| Ano: 2016 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000400658 |
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| Nezan, Elisabeth; Bilien, Gwenael; Boulben, Sylviane; Mertens, Kenneth; Chomerat, Nicolas. |
| A new marine raphid diatom, Plagiolemma distortum Nézan, sp. nov. is described from plankton samples from the Atlantic Ocean, south Brittany (north-western France), where it was regularly observed, but never in high abundances. Cells have an unusual and complex shape under light microscopy (LM) depending on their position and orientation. The two valves are highly vaulted and narrow in width (transapical axis). Cells contain four complexly lobed plastids and a variable number of refractive granules without particular localization. In addition, capsules containing motile cells were observed. Ultrastructural details of the frustules were investigated using scanning electron microscopy (SEM). The girdle bands are simple. Each valve possesses a sigmoid raphe... |
| Tipo: Text |
Palavras-chave: Capsules; Habitat; Molecular phylogeny; Plastids; Raphid diatom; Video. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00441/55235/56797.pdf |
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| Freitas,André V.L.; Mota,Luísa L.; Zacca,Thamara; Barbosa,Eduardo P.. |
| ABSTRACT A new genus and species of Euptychiina (Satyrinae), Cristalinaia vitoria Mota, Zacca & Freitas gen. et sp. nov., is described based on three specimens collected in the region of the Cristalino River, Alta Floresta, Mato Grosso, Brazil. This rare species is known only from this region, where it flies inside the dense bamboo patches typical of that area. The last instar larva and the pupa are described; the larva was observed feeding on mature leaves of the common bamboo Guadua aff. paniculata Munro.urn:lsid:zoobank.org:pub:D61EDE8D-CAE9-41C6-B24D-BB789873566E |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Amazonia; Immature stages; Morphology; Molecular phylogeny; Taxonomy. |
| Ano: 2019 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262019000300254 |
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| Britzke,Ricardo; Troy,Waldo P.; Oliveira,Claudio; Benine,Ricardo C.. |
| ABSTRACT A new species of Moenkhausia is described from tributaries of the upper rio Sepotuba, Paraguay basin, Brazil. The new species is distinguished from its congeners by a combination of characters, including an inconspicuous oval-shaped vertically elongated humeral blotch, extending horizontally from third through five lateral-line scales, and vertically from third row above lateral line to first row below it, followed by a diffuse field of dark chromatophores in the flank, combined with a well-defined dark line at the base of the anal fin. Furthermore, the phylogenetic position of the new species is presented based on molecular data, showing a close relationship among species of Moenkhausia and Hemigrammus that have a well-defined dark line at the... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Hemigrammus; Molecular phylogeny; Neotropical tetras; Taxonomy. |
| Ano: 2018 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252018000200211 |
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| Norarfan,Ahmad Fathi; Mokti,Siti Shazwani Azreena; Taha,Hussein; Amin,Muhamad; Ali,Muhamad; Arai,Takaomi. |
| ABSTRACT The tropical anguillid eel, Anguilla bicolor McCelland, 1844, includes two subspecies, Anguilla bicolor bicolor McCelland, 1844 and Anguilla bicolor pacifica Schmidt, 1928, and is distributed across the Indo-Pacific region. Although A. bicolor is widely distributed and recognized as an important fish resource in the Indo-Pacific region, few studies have been conducted on its genetic variation and population structure. DNA barcoding of A. bicolor specimens collected in the Indo-Pacific region was carried out in this study using mitochondrial cytochrome c oxidase subunit I. Anguilla bicolor was found to diverge genetically, which supported its classification into two different subspecies. In addition, our study showed that A. bicolor bicolor had two... |
| Tipo: Info:eu-repo/semantics/other |
Palavras-chave: Anguillid eel; Haplotype network; Molecular phylogeny; Tropical species. |
| Ano: 2021 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1984-46702021000100501 |
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| Crous, P.W.; Summerell, B.A.; Alfenas, A.C.; Edwards, J.; Pascoe, I.G.; Porter, I.J.; Groenewald, J.Z.. |
| Four different genera of diaporthalean coelomycetous fungi associated with leaf spots of tree hosts are morphologically treated and phylogenetically compared based on the DNA sequence data of the large subunit nuclear ribosomal DNA gene (LSU) and the internal transcribed spacers and 5.8S rRNA gene of the nrDNA operon. These include two new Australian genera, namely Auratiopycnidiella, proposed for a leaf spotting fungus occurring on Tristaniopsis laurina in New South Wales, and Disculoides, proposed for two species occurring on leaf spots of Eucalyptus leaves in Victoria. Two new species are described in Aurantiosacculus, a hitherto monotypic genus associated with leaf spots of Eucalyptus in Australia, namely A. acutatus on E. viminalis, and A.... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Leaf spot disease; Molecular phylogeny; Systematics. |
| Ano: 2012 |
URL: http://www.repository.naturalis.nl/record/531869 |
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| Reijnen, B.T.; Hoeksema, B.W.; Gittenberger, E.. |
| Ovulid gastropods and their octocoral hosts were collected along the leeward coast of Curaçao, Netherlands Antilles. New molecular data of Caribbean and a single Atlantic species were combined with comparable data of Indo-Pacific Ovulidae and a single East-Pacific species from GenBank. Based on two DNA markers, viz. CO-I and 16S, the phylogenetic relationships among all ovulid species of which these data are available are reconstructed. The provisional results suggest a dichotomy between the Atlantic and the Indo-Pacific taxa. Fully grown Simnialena uniplicata closely resembles juvenile Cyphoma gibbosum conchologically. Cymbovula acicularis and C. bahamaensis might be synonyms. The assignments of Caribbean host species for Cyphoma gibbosum, C.... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Anthozoa; Alcyonacea; Caribbean; Curaçao; Molecular phylogeny; Symbiosis; 42.73. |
| Ano: 2010 |
URL: http://www.repository.naturalis.nl/record/336926 |
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| Giaretta,Diorvania Ribeiro; Bogo,Amauri; Coelho,Cileide Maria Medeiros; Guidolin,Altamir Frederico; Dantas,Adriana Cibele de Mesquita; Gomes,Eliane Aparecida. |
| Several diseases have affected apple production, among them there is Glomerella leaf spot (GLS) caused by Colletotrichum spp. The first report of this disease in apple was in plants nearby citrus orchards in São Paulo State, Brazil. The origin of this disease is still not clear, and studies based on the molecular phylogeny could relate the organisms evolutionarily and characterize possible mechanisms of divergent evolution. The amplification of 5.8S-ITS (Internal Transcribed Spacer) of rDNA of 51 pathogenic Colletotrichum spp. isolates from apples, pineapple guava and citrus produced one fragment of approximately 600 bases pairs (bp) for all the isolates analyzed. The amplified fragments were cleaved with restriction enzymes, and fragments from 90 to 500bp... |
| Tipo: Info:eu-repo/semantics/article |
Palavras-chave: Pineapple guava; Citrus; Molecular phylogeny; In silico; Phylogenetic tree. |
| Ano: 2010 |
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782010000400010 |
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| Voglmayr, H.; Castlebury, L.A.; Jaklitsch, W.M.. |
| Molecular phylogenetic analyses of ITS-LSU rDNA sequence data demonstrate that Melanconis species occurring on Juglandaceae are phylogenetically distinct from Melanconis s.str., and therefore the new genus Juglanconis is described. Morphologically, the genus Juglanconis differs from Melanconis by light to dark brown conidia with irregular verrucae on the inner surface of the conidial wall, while in Melanconis s.str. they are smooth. Juglanconis forms a separate clade not affiliated with a described family of Diaporthales, and the family Juglanconidaceae is introduced to accommodate it. Data of macro- and microscopic morphology and phylogenetic multilocus analyses of partial nuSSU-ITS-LSU rDNA, cal, his, ms204, rpb1, rpb2, tef1 and tub2 sequences revealed... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Ascomycota; Diaporthales; Molecular phylogeny; New species; Pathogen; Systematics. |
| Ano: 2017 |
URL: http://www.repository.naturalis.nl/record/622492 |
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| Saburova, Maria; Chomérat, Nicolas. |
| A new thecate, photosynthetic, sand‐dwelling marine dinoflagellate, Laciniporus arabicus gen. et sp. nov., is described from the subtidal sediments of the Omani coast in the Arabian Sea, northern Indian Ocean, based on detailed morphological and molecular data. Cells of L. arabicus are small (16.2‐30.1 μm long and 13.1‐23.2 μm wide), dorsoventrally compressed, with a small apical flap‐shaped projection pointing to the left. The thecal plate pattern is distinguished by minute first precingular plate and sulcus, which extends into the epitheca, with large anterior and right sulcal plates. The Kofoidian thecal tabulation is Po, X, 4′, 2a, 7′′, 6c, 6s, 5′′′, 2′′′′. Morphologically, the revealed plate pattern has an affinity to the Peridiniales, and LSU rDNA... |
| Tipo: Text |
Palavras-chave: Arabian Sea; Benthic dinoflagellates; Dinophyceae; Laciniporus arabicus; Molecular phylogeny; Morphology; Oman; Peridiniales; Taxonomy. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00454/56614/58315.pdf |
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| Scarpa, F.; Cossu, P.; Lai, T.; Sanna, D.; Curini-Galletti, M.; Casu, M.. |
| Given the pending biodiversity crisis, species delimitation is a critically important task in conservation biology, but its efficacy based on single lines of evidence has been questioned as it may not accurately reflect species limits and relationships. Hence, the use of multiple lines of evidence has been portrayed as a means to overcome identification issues arising from gene/ species tree discordance, morphological convergence or recent adaptive radiations. Here, the integrative taxonomic approach has been used to address the study of the Monocelis lineata species complex. The taxonomic resolution of the complex is challenging, as the species lacks sclerotised copulatory structures, which as a rule of thumb aid identification in Proseriata. Eighteen... |
| Tipo: Article / Letter to the editor |
Palavras-chave: Integrative taxonomic approach; Meiofauna conservation; Molecular dating; Molecular phylogeny; Molecular taxonomy; RDNA 18S-28S. |
| Ano: 2016 |
URL: http://www.repository.naturalis.nl/record/607690 |
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| Certad, Gabriela; Zahedi, Alireza; Gantois, Nausicaa; Sawant, Manasi; Creusy, Colette; Duval, Erika; Benamrouz-vanneste, Sadia; Ryan, Una; Viscogliosi, Eric. |
| Current knowledge of Cryptosporidium species/genotypes in marine fish is limited. Following phylogenetic analysis at the 18S rDNA locus, a recent study identified six new genotypes of Cryptosporidium colonizing edible fish found in European seas. Of these, five grouped in a clade together (#Cryptofish 1–5) and one grouped separately (#Cryptofish 7). In the present study, after phylogenetic analyses of #Cryptofish1, #Cryptofish2, #Cryptofish4, #Cryptofish5 and #Cryptofish7 at the actin locus, the presence of two major clades was confirmed. In addition, when possible, longer 18S amplicons were generated. In conclusion, the small genetic distances between these genotypes designated as a novel marine genotype I (#Cryptofish 1-5) suggest that they may be... |
| Tipo: Text |
Palavras-chave: Piscine Cryptosporidium; Edible marine fish; Genetic characterization; 18S rDNA gene; Actin gene; Molecular phylogeny. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00665/77741/79864.pdf |
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| Registros recuperados: 57 | |
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